The Ayla and Agya received their second facelift on 19 March 2020. The facelift also includes additional engine options: the 998 cc 1KR-VE three-cylinder engine (for Agya only) and the 1.2-litre 3NR-VE four-cylinder engine from the Sigra, while the 1.0-litre variants of the Ayla still uses the same engine as the previous version. The 1.0-litre variants of the Ayla retained the same headlamp design from the previous version. This facelift, includes updated front and rear bumper designs, projector headlights with LED side lamps on some trim levels, LED tail lights, dual airbags, 3-point seat belts, steering switch controls, side impact beams and improved interior quality. Its development was led by Daihatsu chief engineer Nobuhiko Ono. The Ayla and Agya received their first facelift on 7 April 2017. In January 2014, TMP announced that the car would be called Wigo. In July 2013, Toyota Motor Philippines (TMP) announced they would import the Agya in December to compete with the Mitsubishi Mirage under a different name.

Initially, both cars were powered by a 998 cc 1KR-DE three-cylinder engine.

A year since they were announced, The Ayla and Agya were officially launched and sold to general public on 9 September 2013. The first units of the Ayla and Agya rolled off the assembly line at Karawang plant on 25 October 2012, and entered mass production in September 2013. Initially the car was available for advance booking after the show but it only lasted for few weeks due to the manufacturers waiting for the government to finalize regulation regarding the LCGC program. The car was first announced and displayed at the 20th Indonesia International Motor Show in September 2012 as Toyota and Daihatsu's response to the Indonesian government's plan for the ' Low Cost Green Car' (LCGC) program.

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